select¶
The gamtools select
tool is used to select or exclude samples
from a segregation table.
Usage and option summary¶
Usage:
gamtools select [OPTIONS] -s <SEGREGATION_FILE> -o <OUTPUT_FILE>
-n [<SAMPLE_NAME> [<SAMPLE_NAME> ...]]
Required parameters:
Option | Description |
---|---|
-s, –segregation-file | A file containing the segregation of all samples |
-n, –sample-names | Names of the samples to remove |
-o, –output-file | Output file path (or - to write to stdout) |
Optional parameters:
Option | Description |
---|---|
-d, –drop-samples | Discard the listed samples (default: discard samples not in the list) |